# Publications Search Within Results Search Within Results search ## 23 results Show filters filter\_alt Sort by Year of PublicationAlphabetical A-Z sort ## 23 results Download 23 citations download- [BibTeX](/node/723441/export?format=bibtex) - [EndNote X3 XML](/node/723441/export?format=endnote8) - [EndNote 7 XML](/node/723441/export?format=endnote7) - [Endnote tagged](/node/723441/export?format=tagged) - [Marc](/node/723441/export?format=marc) - [PubMedId](/node/723441/export?format=pubmed_id) - [RIS](/node/723441/export?format=ris) ### 2025 Nathan Nakatsuka, Drew Adler, Longda Jiang, Austin Hartman, Evan Cheng, Eric Klann, and Rahul Satija. 2025. “[Improving Reproducibility of Differentially Expressed Genes in Single-Cell Transcriptomic Studies of Neurodegenerative Diseases through Meta-Analysis](https://www.nature.com/articles/s41467-025-62579-z?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=oa_20250812&utm_content=10.1038/s41467-025-62579-z)”. Nature Communications, 16, 7436 Nathan Nakatsuka, Drew Adler, Longda Jiang, Austin Hartman, Evan Cheng, Eric Klann, and Rahul Satija. 2025. “[Improving Reproducibility of Differentially Expressed Genes in Single-Cell Transcriptomic Studies of Neurodegenerative Diseases through Meta-Analysis](https://www.nature.com/articles/s41467-025-62579-z?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=oa_20250812&utm_content=10.1038/s41467-025-62579-z)”. Nature Communications, 16, 7436 - [ picture\_as\_pdfs41467-025-62579-z.pdf](/sites/g/files/omnuum5821/files/2025-08/s41467-025-62579-z.pdf) - [ picture\_as\_pdfs41467-025-62579-z.pdf](/sites/g/files/omnuum5821/files/2025-08/s41467-025-62579-z.pdf) 2025. “[The Accuracy of Polygenic Score Models for BMI and Type II Diabetes in the Native Hawaiian Population](https://www.nature.com/articles/s42003-025-08050-7)”. Communications Biology, 8, 651 2025. “[The Accuracy of Polygenic Score Models for BMI and Type II Diabetes in the Native Hawaiian Population](https://www.nature.com/articles/s42003-025-08050-7)”. Communications Biology, 8, 651 - [ picture\_as\_pdfs42003-025-08050-7 (1).pd...](/sites/g/files/omnuum5821/files/2025-08/s42003-025-08050-7%20%281%29.pdf) - [ picture\_as\_pdfs42003-025-08050-7 (1).pd...](/sites/g/files/omnuum5821/files/2025-08/s42003-025-08050-7%20%281%29.pdf) ### 2024 Bryan Dinh, Echo Tang, Kekoa Taparra, Nathan Nakatsuka, Fei Chen, and Charleston Chiang. 2024. “[Recombination Map Tailored to Native Hawaiians May Improve Robustness of Genomic Scans for Positive Selection](/publications/recombination-map-tailored-native-hawaiians-may-improve-robustness)”. Human Genetics, 143, 1, Pp. 85-99 Bryan Dinh, Echo Tang, Kekoa Taparra, Nathan Nakatsuka, Fei Chen, and Charleston Chiang. 2024. “[Recombination Map Tailored to Native Hawaiians May Improve Robustness of Genomic Scans for Positive Selection](/publications/recombination-map-tailored-native-hawaiians-may-improve-robustness)”. Human Genetics, 143, 1, Pp. 85-99 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://link.springer.com/article/10.1007/s00439-023-02625-2) - [ picture\_as\_pdfdinh\_humgenetics2024.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/dinh_humgenetics2024.pdf) Recombination events establish the patterns of haplotypic structure in a population and estimates of recombination rates are used in several downstream population and statistical genetic analyses. Using suboptimal maps from distantly related populations... - [ descriptionPublisher's Version](https://link.springer.com/article/10.1007/s00439-023-02625-2) - [ picture\_as\_pdfdinh\_humgenetics2024.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/dinh_humgenetics2024.pdf) Adam Smith, Lara Wahlster, Soyoung Jeon, Linda Kachuri, Susan Black, Jalen Langie, Liam Cato, Nathan Nakatsuka, Tsz-Fung Chan, Guangze Xia, Soumyaa Mazumder, Wenjian Yang, Steven Gazal, Celeste Eng, Donglei Hu, Esteban G. Burchard, Elad Ziv, Catherine Metayer, Nicholas Mancuso, Jun Yang, Xiaomei Ma, Joseph Wiemels, Fulong Yu, Charleston Chiang, and Vijay Sankaran. 2024. “[A Noncoding Regulatory Variant in IKZF1 Increases Acute Lymphoblastic Leukemia Risk in Hispanic Latino Children ](/publications/noncoding-regulatory-variant-ikzf1-increases-acute-lymphoblastic)”. Cell Genomics Adam Smith, Lara Wahlster, Soyoung Jeon, Linda Kachuri, Susan Black, Jalen Langie, Liam Cato, Nathan Nakatsuka, Tsz-Fung Chan, Guangze Xia, Soumyaa Mazumder, Wenjian Yang, Steven Gazal, Celeste Eng, Donglei Hu, Esteban G. Burchard, Elad Ziv, Catherine Metayer, Nicholas Mancuso, Jun Yang, Xiaomei Ma, Joseph Wiemels, Fulong Yu, Charleston Chiang, and Vijay Sankaran. 2024. “[A Noncoding Regulatory Variant in IKZF1 Increases Acute Lymphoblastic Leukemia Risk in Hispanic Latino Children ](/publications/noncoding-regulatory-variant-ikzf1-increases-acute-lymphoblastic)”. Cell Genomics - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.sciencedirect.com/science/article/pii/S2666979X24000685?via%3Dihub) - [ picture\_as\_pdfdesmith\_cellgenomics2024....](/sites/g/files/omnuum5821/files/nathannakatsuka/files/desmith_cellgenomics2024.pdf) Hispanic/Latino children have the highest risk of acute lymphoblastic leukemia (ALL) in the US compared to other racial/ethnic groups, yet the basis of this remains incompletely understood. Through genetic fine-mapping analyses, we identified a new... - [ descriptionPublisher's Version](https://www.sciencedirect.com/science/article/pii/S2666979X24000685?via%3Dihub) - [ picture\_as\_pdfdesmith\_cellgenomics2024....](/sites/g/files/omnuum5821/files/nathannakatsuka/files/desmith_cellgenomics2024.pdf) Nathan Nakatsuka, Vihang Nakhate, Daniel Harrison, Kristin Galetta, and Abby Olsen. 2024. “[The Case of an 85-Year Old Woman With Subacute Onset of Bilateral Chorea.](https://interactn.org/2024/03/25/case-39-case-of-an-85-year-old-woman-with-subacute-onset-of-bilateral-chorea/)”. Interactive Annals of Clinical and Translational Neurology, 39 Nathan Nakatsuka, Vihang Nakhate, Daniel Harrison, Kristin Galetta, and Abby Olsen. 2024. “[The Case of an 85-Year Old Woman With Subacute Onset of Bilateral Chorea.](https://interactn.org/2024/03/25/case-39-case-of-an-85-year-old-woman-with-subacute-onset-of-bilateral-chorea/)”. Interactive Annals of Clinical and Translational Neurology, 39 - [ descriptionPublisher's Version](https://interactn.org/2024/03/25/case-39-case-of-an-85-year-old-woman-with-subacute-onset-of-bilateral-chorea/) - [ descriptionPublisher's Version](https://interactn.org/2024/03/25/case-39-case-of-an-85-year-old-woman-with-subacute-onset-of-bilateral-chorea/) ### 2023 Nathan Nakatsuka, Brian Holguin, Jakob Sedig, Paul E. Langenwalter II, John Carpenter, Brendan J. Culleton, Cristina García-Moreno, Thomas K. Harper, Debra Martin, Júpiter Martínez-Ramírez, Antonio Porcayo-Michelini, Vera Tiesler, M. Elisa Villapando-Canchola, Alejandro Valdes Herrera, Kim Callan, Elizabeth Curtis, Aisling Kearns, Lora Iliev, Ann Marie Lawson, Matthew Mah, Swapan Mallick, Adam Micco, Megan Michel, J. Noah Workman, Jonas Oppenheimer, Lijun Qiu, Fatma Zalzala, Nadin Rohland, Jose Luis Punzo Diaz, John R. Johnson, and David Reich. 2023. “[Genetic Continuity and Change Among the Indigenous Peoples of California](/publications/genetic-continuity-and-change-among-indigenous-peoples-california)”. Nature Nathan Nakatsuka, Brian Holguin, Jakob Sedig, Paul E. Langenwalter II, John Carpenter, Brendan J. Culleton, Cristina García-Moreno, Thomas K. Harper, Debra Martin, Júpiter Martínez-Ramírez, Antonio Porcayo-Michelini, Vera Tiesler, M. Elisa Villapando-Canchola, Alejandro Valdes Herrera, Kim Callan, Elizabeth Curtis, Aisling Kearns, Lora Iliev, Ann Marie Lawson, Matthew Mah, Swapan Mallick, Adam Micco, Megan Michel, J. Noah Workman, Jonas Oppenheimer, Lijun Qiu, Fatma Zalzala, Nadin Rohland, Jose Luis Punzo Diaz, John R. Johnson, and David Reich. 2023. “[Genetic Continuity and Change Among the Indigenous Peoples of California](/publications/genetic-continuity-and-change-among-indigenous-peoples-california)”. Nature - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-023-06771-5) - [ picture\_as\_pdfnakatsuka\_etal\_california...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/nakatsuka_etal_californiamexico_nature_2023.pdf) Before the colonial period, California harboured more language variation than all of Europe, and linguistic and archaeological analyses have led to many hypotheses to explain this diversity. We report genome-wide data from 79 ancient individuals from... - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-023-06771-5) - [ picture\_as\_pdfnakatsuka\_etal\_california...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/nakatsuka_etal_californiamexico_nature_2023.pdf) ### 2022 V. Tiesler, J. Sedig, N. Nakatsuka, S. Mallick, I. Lazaridis, R. Bernardos, N. Broomandkhoshbacht, J. Oppenheimer, A. M. Lawson, K. Stewardson, N. Rohland, D. Kennett, T. D. Price, and D. Reich. 2022. “[Life and Death in Early Colonial Campeche: New Insights from Ancient DNA](/publications/life-and-death-early-colonial-campeche-new-insights-ancient-dna)”. Antiquity, 96, 388, Pp. 937-54 V. Tiesler, J. Sedig, N. Nakatsuka, S. Mallick, I. Lazaridis, R. Bernardos, N. Broomandkhoshbacht, J. Oppenheimer, A. M. Lawson, K. Stewardson, N. Rohland, D. Kennett, T. D. Price, and D. Reich. 2022. “[Life and Death in Early Colonial Campeche: New Insights from Ancient DNA](/publications/life-and-death-early-colonial-campeche-new-insights-ancient-dna)”. Antiquity, 96, 388, Pp. 937-54 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.cambridge.org/core/journals/antiquity/article/life-and-death-in-early-colonial-campeche-new-insights-from-ancient-dna/1E92D867436AD6C150B52FC46A0915F1) - [ picture\_as\_pdfcampeche\_antiquity2022.pd...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/campeche_antiquity2022.pdf) Campeche, one of the Spanish Empire's main Mexican ports, was a place where previously distinct cultures and populations intermingled during the colonial era (AD 1540–1680). Investigation of the town's central plaza revealed a Hispanic cemetery of multi... - [ descriptionPublisher's Version](https://www.cambridge.org/core/journals/antiquity/article/life-and-death-in-early-colonial-campeche-new-insights-from-ancient-dna/1E92D867436AD6C150B52FC46A0915F1) - [ picture\_as\_pdfcampeche\_antiquity2022.pd...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/campeche_antiquity2022.pdf) ### 2021 D. Popovic, M. Molak, M. Ziolkowski, A. Vranich, M. Sobczyk, D. Vidaurre, G. Agresti, M. Skrzypczak, K. Ginalski, T. Lamnidis, N. Nakatsuka, S. Mallick, and M. Baca. 2021. “[Ancient Genomes Reveal Long Range Influence of the Site and Culture of Tiwanaku](/publications/ancient-genomes-reveal-long-range-influence-site-and-culture-tiwanaku)”. Science Advances, 7, 39 D. Popovic, M. Molak, M. Ziolkowski, A. Vranich, M. Sobczyk, D. Vidaurre, G. Agresti, M. Skrzypczak, K. Ginalski, T. Lamnidis, N. Nakatsuka, S. Mallick, and M. Baca. 2021. “[Ancient Genomes Reveal Long Range Influence of the Site and Culture of Tiwanaku](/publications/ancient-genomes-reveal-long-range-influence-site-and-culture-tiwanaku)”. Science Advances, 7, 39 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.science.org/doi/10.1126/sciadv.abg7261?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed) - [ picture\_as\_pdfpopovic2021\_tiwanaku.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/popovic2021_tiwanaku.pdf) Tiwanaku civilization flourished in the Lake Titicaca basin between 500 and 1000 CE and at its apogee influenced wide areas across the southern Andes. Despite a considerable amount of archaeological data, little is known about the Tiwanaku population. We... - [ descriptionPublisher's Version](https://www.science.org/doi/10.1126/sciadv.abg7261?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed) - [ picture\_as\_pdfpopovic2021\_tiwanaku.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/popovic2021_tiwanaku.pdf) S. Alpaslan-Roodenberg, authors), N. Nakatsuka, authors), and M. Zahir. 2021. “[Ethics of DNA Research on Human Remains: Five Globally Applicable Guidelines](/publications/ethics-dna-research-human-remains-five-globally-applicable-guidelines)”. Nature, 599, 7883, Pp. 41-46 S. Alpaslan-Roodenberg, authors), N. Nakatsuka, authors), and M. Zahir. 2021. “[Ethics of DNA Research on Human Remains: Five Globally Applicable Guidelines](/publications/ethics-dna-research-human-remains-five-globally-applicable-guidelines)”. Nature, 599, 7883, Pp. 41-46 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-021-04008-x) - [ picture\_as\_pdfethicsofdnaresearch\_natur...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/ethicsofdnaresearch_nature2021.pdf) We are a group of archaeologists, anthropologists, curators and geneticists representing diverse global communities and 31 countries. All of us met in a virtual workshop dedicated to ethics in ancient DNA research held in November 2020. There was... - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-021-04008-x) - [ picture\_as\_pdfethicsofdnaresearch\_natur...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/ethicsofdnaresearch_nature2021.pdf) ### 2020 Nathan Nakatsuka, Iosif Lazaridis, Chiara Barbieri, Pontus Skoglund, Nadin Rohland, Swapan Mallick, Cosimo Posth, Kelly Harkins-Kinkaid, Matthew Ferry, Éadaoin Harney, Megan Michel, Kristin Stewardson, Jannine Novak-Forst, José Capriles, Marta Alfonso Durruty, Karina Aranda Álvarez, David Beresford-Jones, Richard Burger, Lauren Cadwallader, Ricardo Fujita, Johny Isla, George Lau, Carlos Lémuz Aguirre, Steven LeBlanc, Sergio Calla Maldonado, Frank Meddens, Pablo Messineo, Brendan Culleton, Thomas Harper, Jeffrey Quilter, Gustavo Politis, Kurt Rademaker, Markus Reindel, Mario Rivera, Lucy Salazar, José Sandoval, Calogero Santoro, Nahuel Scheifler, Vivien Standen, Maria Ines Barreto, Isabel Flores Espinoza, Elsa Tomasto-Cagigao, Guido Valverde, Douglas Kennett, Alan Cooper, Johannes Krause, Wolfgang Haak, Bastien Llamas, David Reich, and Lars Fehren-Schmitz. 2020. “[A Paleogenomic Reconstruction of the Deep Population History of the Andes](/publications/paleogenomic-reconstruction-deep-population-history-andes)”. Cell, 181, 5, Pp. 1131-45 Nathan Nakatsuka, Iosif Lazaridis, Chiara Barbieri, Pontus Skoglund, Nadin Rohland, Swapan Mallick, Cosimo Posth, Kelly Harkins-Kinkaid, Matthew Ferry, Éadaoin Harney, Megan Michel, Kristin Stewardson, Jannine Novak-Forst, José Capriles, Marta Alfonso Durruty, Karina Aranda Álvarez, David Beresford-Jones, Richard Burger, Lauren Cadwallader, Ricardo Fujita, Johny Isla, George Lau, Carlos Lémuz Aguirre, Steven LeBlanc, Sergio Calla Maldonado, Frank Meddens, Pablo Messineo, Brendan Culleton, Thomas Harper, Jeffrey Quilter, Gustavo Politis, Kurt Rademaker, Markus Reindel, Mario Rivera, Lucy Salazar, José Sandoval, Calogero Santoro, Nahuel Scheifler, Vivien Standen, Maria Ines Barreto, Isabel Flores Espinoza, Elsa Tomasto-Cagigao, Guido Valverde, Douglas Kennett, Alan Cooper, Johannes Krause, Wolfgang Haak, Bastien Llamas, David Reich, and Lars Fehren-Schmitz. 2020. “[A Paleogenomic Reconstruction of the Deep Population History of the Andes](/publications/paleogenomic-reconstruction-deep-population-history-andes)”. Cell, 181, 5, Pp. 1131-45 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.cell.com/cell/fulltext/S0092-8674(20)30477-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867420304773%3Fshowall%3Dtrue) - [ picture\_as\_pdfCell2020\_Andes.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/cell2020_andes.pdf) There are many unanswered questions about the population history of the Central and South Central Andes, particularly regarding the impact of large-scale societies, such as the Moche, Wari, Tiwanaku, and Inca. We assembled genome-wide data on 89... - [ descriptionPublisher's Version](https://www.cell.com/cell/fulltext/S0092-8674(20)30477-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867420304773%3Fshowall%3Dtrue) - [ picture\_as\_pdfCell2020\_Andes.pdf](/sites/g/files/omnuum5821/files/nathannakatsuka/files/cell2020_andes.pdf) Jacob Bongers, Nathan Nakatsuka, Colleen O’Shea, Thomas Harper, Henry Tantaleán, Charles Stanish, and Lars Fehren-Schmitz. 2020. “[Integration of Ancient DNA With Transdisciplinary Dataset Finds Strong Support for Inca Resettlement in the South Peruvian Coast](/publications/integration-ancient-dna-transdisciplinary-dataset-finds-strong-support)”. PNAS, 117, 31, Pp. 18359-68 Jacob Bongers, Nathan Nakatsuka, Colleen O’Shea, Thomas Harper, Henry Tantaleán, Charles Stanish, and Lars Fehren-Schmitz. 2020. “[Integration of Ancient DNA With Transdisciplinary Dataset Finds Strong Support for Inca Resettlement in the South Peruvian Coast](/publications/integration-ancient-dna-transdisciplinary-dataset-finds-strong-support)”. PNAS, 117, 31, Pp. 18359-68 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.pnas.org/content/117/31/18359.long) - [ picture\_as\_pdfPNAS2020\_ChinchaValley.pd...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/pnas2020_chinchavalley.pdf) Ancient DNA (aDNA) analysis provides a powerful means of investigating human migration, social organization, and a plethora of other crucial questions about humanity's past. Recently, specialists have suggested that the ideal research design involving... - [ descriptionPublisher's Version](https://www.pnas.org/content/117/31/18359.long) - [ picture\_as\_pdfPNAS2020\_ChinchaValley.pd...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/pnas2020_chinchavalley.pdf) Nathan Nakatsuka*, Pierre Luisi*, Josefina Motti, Mónica Salemme, Fernando Santiago, Manuel D’Angelo Del Campo, Rodrigo Vecchi, Yolanda Espinosa-Parrilla, Alfredo Prieto, Nicole Adamski, Ann Marie Lawson, Thomas Harper, Brendan Culleton, Douglas Kennett, Carles Lalueza-Fox, Swapan Mallick, Nadin Rohland, Ricardo Guichón, Graciela Cabana, Rodrigo Nores, and David Reich. 2020. “[Ancient Genomes in South Patagonia Reveal Population Movements Associated With Technological Shifts and Geography](/publications/ancient-genomes-south-patagonia-reveal-population-movements-associated)”. Nature Communications, 11, 1, Pp. 3868 Nathan Nakatsuka*, Pierre Luisi*, Josefina Motti, Mónica Salemme, Fernando Santiago, Manuel D’Angelo Del Campo, Rodrigo Vecchi, Yolanda Espinosa-Parrilla, Alfredo Prieto, Nicole Adamski, Ann Marie Lawson, Thomas Harper, Brendan Culleton, Douglas Kennett, Carles Lalueza-Fox, Swapan Mallick, Nadin Rohland, Ricardo Guichón, Graciela Cabana, Rodrigo Nores, and David Reich. 2020. “[Ancient Genomes in South Patagonia Reveal Population Movements Associated With Technological Shifts and Geography](/publications/ancient-genomes-south-patagonia-reveal-population-movements-associated)”. Nature Communications, 11, 1, Pp. 3868 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.nature.com/articles/s41467-020-17656-w) - [ picture\_as\_pdfNatureCommunications2020\_...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/naturecommunications2020_patagonia.pdf) Archaeological research documents major technological shifts among people who have lived in the southern tip of South America (South Patagonia) during the last thirteen millennia, including the development of marine-based economies and changes in tools... - [ descriptionPublisher's Version](https://www.nature.com/articles/s41467-020-17656-w) - [ picture\_as\_pdfNatureCommunications2020\_...](/sites/g/files/omnuum5821/files/nathannakatsuka/files/naturecommunications2020_patagonia.pdf) - Previous page chevron\_left - [1](?page=0 "Current page") - [2](?page=1 "Go to page 2") - [ Next page chevron\_right ](?page=1 "Go to next page")